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File indexing completed on 2025-08-05 08:18:02

 #include "TruthRecoTrackMatching.h"
 #include "TrkrClusterIsMatcher.h"
 #include "ClusKeyIter.h"
 
 #include <g4detectors/PHG4TpcCylinderGeom.h>
 #include <g4detectors/PHG4TpcCylinderGeomContainer.h>
 
 #include <g4main/PHG4TruthInfoContainer.h>
 
 #include <g4tracking/EmbRecoMatch.h>
 #include <g4tracking/EmbRecoMatchContainer.h>
 #include <g4tracking/EmbRecoMatchContainerv1.h>
 #include <g4tracking/EmbRecoMatchv1.h>
 #include <g4tracking/TrkrTruthTrack.h>
 #include <g4tracking/TrkrTruthTrackContainer.h>
 
 #include <trackbase/TpcDefs.h>
 #include <trackbase/TrkrCluster.h>
 #include <trackbase/TrkrClusterContainer.h>
 #include <trackbase/TrkrDefs.h>
 
 #include <trackbase_historic/SvtxTrack.h>
 #include <trackbase_historic/SvtxTrackMap.h>
 
 #include <fun4all/Fun4AllReturnCodes.h>
 
 #include <phool/PHCompositeNode.h>
 #include <phool/PHDataNode.h>  // for PHDataNode
 #include <phool/PHIODataNode.h>
 #include <phool/PHNode.h>  // for PHNode
 #include <phool/PHNodeIterator.h>
 #include <phool/PHObject.h>  // for PHObject
 #include <phool/PHRandomSeed.h>
 #include <phool/getClass.h>
 #include <phool/phool.h>  // for PHWHERE
 
 #include <TFile.h>
 #include <TSystem.h>
 #include <TTree.h>
 
 #include <boost/format.hpp>
 
 #include <algorithm>
 
 // To change:
 // Make the definition of matching clusters to be if the truth cluster center is withing 1/2 of width of the reco track center
 
 TruthRecoTrackMatching::TruthRecoTrackMatching(
       TrkrClusterIsMatcher* _ismatcher
     , const unsigned short _nmincluster_match
     , const float _nmincluster_ratio
     , const float _cutoff_dphi
     , const float _same_dphi
     , const float _cutoff_deta
     , const float _same_deta
     , const unsigned short _max_nreco_per_truth
     , const unsigned short _max_ntruth_per_reco)
   : m_ismatcher { _ismatcher }
   , m_nmincluster_match{_nmincluster_match}  // minimum number of clusters to match, default=4
   , m_nmincluster_ratio{_nmincluster_ratio}  // minimum ratio to match a track, default=0.
                                              // -- Track Kinematic Cuts to match --
   , m_cutoff_dphi{_cutoff_dphi}              // maximum |dphi|=|phi_reco-phi_truth| to search for match
   , m_same_dphi{_same_dphi}                  // all tracks in this |dphi| must be tested for matches
   , m_cutoff_deta{_cutoff_deta}              // same as m_cutoff_dphi for deta
   , m_same_deta{_same_deta}                  // same as m_same_dphi for deta
                                              // cluster matching widths ()
                                              // number of truth tracks allowed matched per reco track, and v. versa
   , m_max_nreco_per_truth{_max_nreco_per_truth}
   , m_max_ntruth_per_reco{_max_ntruth_per_reco}
 {
   m_TCEval.ismatcher = m_ismatcher;
   if (Verbosity() > 50)
   {
     std::cout << " Starting TruthRecoTrackMatching.cc " << std::endl;
   }
 }
 
 int TruthRecoTrackMatching::InitRun(PHCompositeNode* topNode)  //`
 {
   if (Verbosity() > 10)
   {
     topNode->print();
   }
   auto init_status = m_ismatcher->init(topNode);
   if (init_status == Fun4AllReturnCodes::ABORTRUN)
   {
     return init_status;
   }
 
   if (createNodes(topNode) != Fun4AllReturnCodes::EVENT_OK)
   {
     return Fun4AllReturnCodes::ABORTRUN;
   }
   m_nmatched_id_reco = &(m_EmbRecoMatchContainer->map_nTruthPerReco());
   m_nmatched_id_true = &(m_EmbRecoMatchContainer->map_nRecoPerTruth());
   return Fun4AllReturnCodes::EVENT_OK;
 }
 
 int TruthRecoTrackMatching::process_event(PHCompositeNode* topnode)
 {
   if (topnode == nullptr)
   {
     return Fun4AllReturnCodes::ABORTRUN;
   }
   if (Verbosity() > 1000)
   {
     topnode->print();  // perhaps not needed
   }
 
   m_nmatched_index_true.clear();
 
   // -------------------------------------------------------------------------------
   // Build recoData
   // ------------------------------------------------------------------------------
 
   // recoData is a vector of tuples that acts like a table with four columns,
   // with one entry each of n tracks:
   //    (0)::float  (1)::float  (2)::float  (3)::short
   //     phi-0        eta-0       pT-0       index-0
   //     phi-1        eta-1       pT-1       index-1
   //     phi-2        eta-2       pT-2       index-2
   //     ...          ...         ...        ...
   //     phi-n-2      eta-n-2     pT-n-2     index-n-2
   //     phi-n-1      eta-n-1     pT-n-1     index-n-1
   //     phi-n        eta-n       pT-n       index-n
   if (Verbosity() > 60)
   {
     std::cout << "reco tracks size: " << m_SvtxTrackMap->size() << std::endl;
   }
 
   recoData.clear();
 
   for (auto& reco : *m_SvtxTrackMap)
   {
     auto index_reco = reco.first;
     auto track = reco.second;
     recoData.push_back({track->get_phi(), track->get_eta(), track->get_pt(), index_reco});
   }
   // sort the recoData table by phi
   std::sort(recoData.begin(), recoData.end(), CompRECOtoPhi());
 
   // phi will be sorted by proximity in the table, so re-add the first entries to the
   // end of the table so that they can be compared against the phi across the
   // circular boundary condition. This makes the table potentially look like:
   //    (0)::float  (1)::float  (2)::float  (3)::short
   //     phi-0        eta-0       pT-0       index-0
   //     phi-1        eta-1       pT-1       index-1
   //     phi-2        eta-2       pT-2       index-2
   //     ...          ...         ...        ...
   //     phi-n-2      eta-n-2     pT-n-2     index-n-2
   //     phi-n-1      eta-n-1     pT-n-1     index-n-1
   //     phi-n        eta-n       pT-n       index-n
   //     phi-0        eta-0       pT-0       index-0 // <- values wrapped from the lowest phi values
   //     phi-1        eta-1       pT-1       index-1 // <-
   RECOvec wraps{};
   auto wrap_from_start = std::upper_bound(recoData.begin(),
                                           recoData.end(), (-M_PI + m_cutoff_dphi), CompRECOtoPhi());
   for (auto iter = recoData.begin(); iter != wrap_from_start; ++iter)
   {
     auto entry = *iter;                                              // make a new copy to wrap to the other side of recoData
     std::get<RECOphi>(entry) = std::get<RECOphi>(entry) + 2 * M_PI;  // put the new copy on the other end
     wraps.push_back(entry);
   }
   for (auto E : wraps)
   {
     recoData.push_back(E);
   }
 
   if (Verbosity() > 70)
   {
     std::cout << " ****************************************** " << std::endl;
     std::cout << " This is the RECO map of tracks to match to " << std::endl;
     std::cout << " ****************************************** " << std::endl;
     for (auto& E : recoData)
     {
       std::cout << (boost::format(" id:%2i  (phi:eta:pt) (%5.2f:%5.2f:%5.2f)") %(std::get<RECOid>(E))
             %(std::get<RECOphi>(E)) %(std::get<RECOeta>(E)) %(std::get<RECOpt>(E))).str()
                 << std::endl;
     }
     std::cout << " ****end*listing*********************** " << std::endl;
   }
 
   /******************************************************************************
    * Loop through the truth tracks one at a time. Based on track phi, eta, and pT
    * build two indices of truth-to-reco pairs:
    *    innerbox_pairs: pairs of truth-to-reco tracks within same_d{phi,eta}
    *      i.e. |phi_true-phi_reco|<same_dphi && |eta_true-eta_reco|<same_deta).
    *      These are the "innerboxes" (retangles in phi and eta space).
    *      All of these pairs will have to be checked for matching tracks, and the
    *      best fits will be removed first.
    *    outerbox_pairs: these are wider boxes (sized by cutoff_d{phi,eta})
    *      These are possible matches that are only checked for tracks remaining
    *      after the innerbox_pairs are checked and matches made.
    ******************************************************************************/
 
   std::vector<std::pair<unsigned short, unsigned short>> outerbox_pairs{};
   std::vector<std::pair<unsigned short, unsigned short>> innerbox_pairs{};
 
   if (topnode == nullptr)
   {
     return Fun4AllReturnCodes::ABORTRUN;
   }
   if (Verbosity() > 70)
   {
     std::cout << "Number of truth tracks: " << m_TrkrTruthTrackContainer->getMap().size() << std::endl;
     for (auto& _pair : m_TrkrTruthTrackContainer->getMap())
     {
       auto& track = _pair.second;
       std::cout << (boost::format(" id:%2i  (phi:eta:pt) (%5.2f:%5.2f:%5.2f nclus: %i)") %track->getTrackid()
                         %track->getPhi() %track->getPseudoRapidity() %track->getPt()
             %((int) track->getClusters().size())).str()
                 << std::endl;
     }
     std::cout << " ----end-listing-truth-tracks---------- " << std::endl;
   }
 
   for (auto _pair : m_TrkrTruthTrackContainer->getMap())
   {
     auto id_true = _pair.first;
     auto track = _pair.second;
 
     auto match_indices = find_box_matches(track->getPhi(),
                                           track->getPseudoRapidity(), track->getPt());
 
     // keep track of all truth tracks (by track-id) which has been matched
     for (auto& id_reco : match_indices.first)
     {
       innerbox_pairs.emplace_back(id_true, id_reco);
     }
     for (auto& id_reco : match_indices.second)
     {
       outerbox_pairs.emplace_back(id_true, id_reco);
     }
 
     if (Verbosity() > 80)
     {
       std::cout << (boost::format(" T(%i)  find box(%5.2f:%5.2f:%5.2f)")
             %((int) track->getTrackid()) %track->getPhi()
             %track->getPseudoRapidity() %track->getPt()).str();
       for (auto& id_reco : match_indices.first)
       {
         std::cout << "->IB(" << id_reco << ")";
       }
       for (auto& id_reco : match_indices.second)
       {
         std::cout << "->OB(" << id_reco << ")";
       }
       std::cout << std::endl;
     }
   }
 
   if (Verbosity() > 100)
   {
     std::cout << "Innerbox pairs" << std::endl;
   }
   match_tracks_in_box(innerbox_pairs);
   if (Verbosity() > 100)
   {
     std::cout << "Outerbox pairs" << std::endl;
   }
   match_tracks_in_box(outerbox_pairs);
 
   // fill the list of all truth track ids that are not matched
   for (auto _pair : m_TrkrTruthTrackContainer->getMap())
   {
     auto id_true = _pair.first;
     m_EmbRecoMatchContainer->checkfill_idsTruthUnmatched(id_true);
   }
 
   if (Verbosity() > 50)
   {
     std::cout << " --START--print-all-stored-matches--" << std::endl;
     std::cout << " --0-- Printing all matches stored (start)" << std::endl;
     // re-print all the tracks with the matches with the fit values
     for (auto match : m_EmbRecoMatchContainer->getMatches())
     {
       std::cout << (boost::format(" Match id(%2i->%2i) nClusMatch-nClusTrue-nClusReco (%2i:%2i:%2i)")
                         %match->idTruthTrack() %match->idRecoTrack()
             %match->nClustersMatched() %match->nClustersTruth() %match->nClustersReco()).str()
                 << std::endl;
     }
     std::cout << " --END--print-all-stored-matches----" << std::endl;
   }
 
   if (m_write_diag)
   {
     fill_tree();
   }
 
   return Fun4AllReturnCodes::EVENT_OK;
 }
 
 int TruthRecoTrackMatching::End(PHCompositeNode* /*topNode*/)
 {
   TFile* s_current = gDirectory->GetFile();
   if (m_write_diag)
   {
     m_diag_file->cd();
     /* G4Eval::write_StringToTFile( */
     /*     "trk_match_sel", */
     /*     Form("  Matching criteria:\n" */
     /*          "  min. clusters to match:  %i\n" */
     /*          "  min. clust. match ratio: %4.2f" */
     /*          "  dphi small window:       %4.2f" */
     /*          "  dphi large windows:      %4.2f" */
     /*          "  deta small window:       %4.2f" */
     /*          "  deta large window:       %4.2f" */
     /*          "  nmax phg4 matches per svtx:  %i" */
     /*          "  nmax svtx matches per phg4:  %i", */
     /*          m_nmincluster_match, m_nmincluster_ratio, m_same_dphi, m_cutoff_dphi, m_same_deta, m_cutoff_deta, m_max_ntruth_per_reco, m_max_nreco_per_truth)); */
     m_diag_tree->Write();
     m_diag_file->Save();
     m_diag_file->Close();
     if (s_current != nullptr)
     {
       s_current->cd();
     }
   }
 
   return Fun4AllReturnCodes::EVENT_OK;
 }
 
 //--------------------------------------------------
 // Internal functions
 //--------------------------------------------------
 
 int TruthRecoTrackMatching::createNodes(PHCompositeNode* topNode)
 {
   PHNodeIterator iter(topNode);
   PHCompositeNode* dstNode = dynamic_cast<PHCompositeNode*>(iter.findFirst("PHCompositeNode", "DST"));
   if (!dstNode)
   {
     std::cout << PHWHERE << "DST Node missing, doing nothing." << std::endl;
     exit(1);
   }
 
   // Initiailize the modules
   m_PHG4TruthInfoContainer = findNode::getClass<PHG4TruthInfoContainer>(topNode, "G4TruthInfo");
   if (!m_PHG4TruthInfoContainer)
   {
     std::cout << "Could not locate G4TruthInfo node when running "
               << "\"TruthRecoTrackMatching\" module." << std::endl;
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   m_SvtxTrackMap = findNode::getClass<SvtxTrackMap>(topNode, "SvtxTrackMap");
   if (!m_SvtxTrackMap)
   {
     std::cout << "Could not locate SvtxTrackMap node when running "
               << "\"TruthRecoTrackMatching\" module." << std::endl;
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   m_TruthClusterContainer = findNode::getClass<TrkrClusterContainer>(topNode,
                                                                      "TRKR_TRUTHCLUSTERCONTAINER");
   if (!m_TruthClusterContainer)
   {
     std::cout << "Could not locate TRKR_TRUTHCLUSTERCONTAINER node when "
               << "running \"TruthRecoTrackMatching\" module." << std::endl;
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   m_RecoClusterContainer = findNode::getClass<TrkrClusterContainer>(topNode, "TRKR_CLUSTER");
   if (!m_RecoClusterContainer)
   {
     std::cout << "Could not locate TRKR_CLUSTER node when running "
               << "\"TruthRecoTrackMatching\" module." << std::endl;
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   m_TrkrTruthTrackContainer = findNode::getClass<TrkrTruthTrackContainer>(topNode,
                                                                           "TRKR_TRUTHTRACKCONTAINER");
   if (!m_TrkrTruthTrackContainer)
   {
     std::cout << "Could not locate TRKR_TRUTHTRACKCONTAINER node when "
               << "running \"TruthRecoTrackMatching\" module." << std::endl;
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   m_PHG4TpcCylinderGeomContainer =
       findNode::getClass<PHG4TpcCylinderGeomContainer>(topNode, "CYLINDERCELLGEOM_SVTX");
   if (!m_PHG4TpcCylinderGeomContainer)
   {
     std::cout << "Could not locate CYLINDERCELLGEOM_SVTX node when "
               << "running \"TruthRecoTrackMatching\" module." << std::endl;
     /* std::cout << PHWHERE << "ERROR: Can't find node CYLINDERCELLGEOM_SVTX" << std::endl; */
     return Fun4AllReturnCodes::ABORTEVENT;
   }
 
   // note that layers 0-6, and > 55, don't work
   /* for (int layer=7; layer<55; ++layer) { */
   /*   PHG4TpcCylinderGeom *layergeom = m_PHG4TpcCylinderGeomContainer->GetLayerCellGeom(layer); */
   /*   if (layer==7) m_zstep = layergeom->get_zstep(); */
   /*   m_phistep[layer] = layergeom->get_phistep(); */
   /* } */
   m_EmbRecoMatchContainer = findNode::getClass<EmbRecoMatchContainer>(topNode,
                                                                       "TRKR_EMBRECOMATCHCONTAINER");
   if (!m_EmbRecoMatchContainer)
   {
     PHNodeIterator dstiter(dstNode);
 
     auto DetNode = dynamic_cast<PHCompositeNode*>(dstiter.findFirst("PHCompositeNode", "TRKR"));
     if (!DetNode)
     {
       DetNode = new PHCompositeNode("TRKR");
       dstNode->addNode(DetNode);
     }
 
     m_EmbRecoMatchContainer = new EmbRecoMatchContainerv1;
     auto newNode = new PHIODataNode<PHObject>(m_EmbRecoMatchContainer,
                                               "TRKR_EMBRECOMATCHCONTAINER", "PHObject");
     DetNode->addNode(newNode);
   }
 
   m_ActsGeometry = findNode::getClass<ActsGeometry>(topNode, "ActsGeometry");
 
   return Fun4AllReturnCodes::EVENT_OK;
 }
 
 std::pair<std::vector<unsigned short>, std::vector<unsigned short>>
 TruthRecoTrackMatching::find_box_matches(float truth_phi, float truth_eta, float truth_pt)
 {
   // sort through the recoData to find:
   //     inner_box : possible matches withing m_same_d{phi,eta,pt}
   //     outer_box : (assumed to be strictly larger than, and therefore contain, inner_box, in m_cutoff_d{phi, eta,pt}
   // recoData is already sorted by eta, but as the boxes "zoom in" on acceptable matches, it gets
   // sorted by eta and (if applicable) pT as well. `mix_pair` keeps track of the range of recoData that has
   // been sorted so that it can be resorted to phi order.
   RECO_pair_iter mix_pair{recoData.begin(), recoData.end()};
 
   mix_pair.first = std::lower_bound(mix_pair.first, mix_pair.second,
                                     truth_phi - m_cutoff_dphi, CompRECOtoPhi());
 
   mix_pair.second = std::upper_bound(mix_pair.first, mix_pair.second,
                                      truth_phi + m_cutoff_dphi, CompRECOtoPhi());
 
   if (mix_pair.first == mix_pair.second)
   {
     // there are no possible phi_matches; return nothing
     return {{}, {}};
   }
 
   // There are tracks within the outer_box phi range;
   // now re-shuffle the phi outerbox range for eta and see if there
   // are tracks in outer_box-eta range
   std::sort(mix_pair.first, mix_pair.second, CompRECOtoEta());
 
   RECO_pair_iter outer_box = mix_pair;
   outer_box.first = std::lower_bound(mix_pair.first, mix_pair.second,
                                      truth_eta - m_cutoff_deta, CompRECOtoEta());
 
   outer_box.second = std::lower_bound(outer_box.first, outer_box.second,
                                       truth_eta + m_cutoff_deta, CompRECOtoEta());
 
   if (outer_box.first == outer_box.second)
   {
     // there are no eta_matches in outerbox; resort mix_pair and return nothing
     std::sort(mix_pair.first, mix_pair.second, CompRECOtoPhi());
     return {{}, {}};
   }
 
   // if pt is specified, restrict pt_box to the given range
   RECO_pair_iter inner_box = outer_box;
   const float _delta_outer_pt = delta_outer_pt(truth_pt);
   const float _delta_inner_pt = delta_inner_pt(truth_pt);
   if (_delta_outer_pt > 0)
   {
     std::sort(outer_box.first, outer_box.second, CompRECOtoPt());
     outer_box.first = std::lower_bound(outer_box.first, outer_box.second, truth_pt - _delta_outer_pt, CompRECOtoPt());
     outer_box.second = std::upper_bound(outer_box.first, outer_box.second, truth_pt + _delta_outer_pt, CompRECOtoPt());
 
     // if not outer_box, resort and return nothing
     if (outer_box.first == outer_box.second)
     {
       // there are no eta_matches in outerbox; resort mix_pair and return nothing
       std::sort(mix_pair.first, mix_pair.second, CompRECOtoPhi());
       return {{}, {}};
     }
 
     // now calculate the inner box -- this time sorting in reverse -- pT, then eta, then phi
     inner_box = outer_box;
     if (_delta_inner_pt > 0)
     {
       // start the inner pair -- the outerbox is already sorted by pT
       inner_box.first = std::lower_bound(inner_box.first,
                                          inner_box.second, truth_pt - _delta_inner_pt, CompRECOtoPt());
       inner_box.second = std::upper_bound(inner_box.first,
                                           inner_box.second, truth_pt + _delta_inner_pt, CompRECOtoPt());
     }
 
     // go back to sorted by eta
     std::sort(inner_box.first, inner_box.second, CompRECOtoEta());
   }
 
   // At this point we know that we have outer_box matches
   // Finish checking if there are any possible inner_box matches
 
   // check for inner_box eta matches
   if (inner_box.first != inner_box.second)
   {
     inner_box.first = std::lower_bound(inner_box.first, inner_box.second,
                                        truth_eta - m_same_deta, CompRECOtoEta());
 
     inner_box.second = std::lower_bound(inner_box.first, inner_box.second,
                                         truth_eta + m_same_deta, CompRECOtoEta());
   }
 
   // check for inner_box phi matches
   if (inner_box.first != inner_box.second)
   {
     std::sort(inner_box.first, inner_box.second, CompRECOtoPhi());
 
     inner_box.first = std::lower_bound(inner_box.first, inner_box.second,
                                        truth_phi - m_same_dphi, CompRECOtoPhi());
 
     inner_box.second = std::lower_bound(inner_box.first, inner_box.second,
                                         truth_phi + m_same_dphi, CompRECOtoPhi());
   }
 
   // At this point there are definitely outer_box matches, and
   // possible inner_box matches.
   // Return all these possible matches, evaluating all inner_box_matches
   std::vector<unsigned short> inner_box_matches, outer_box_matches;
 
   // fill inner_box_matches
   for (auto iter = inner_box.first; iter != inner_box.second; ++iter)
   {
     inner_box_matches.push_back(std::get<RECOid>(*iter));
   }
   // fill inner_box_matches
   for (auto iter = outer_box.first; iter != inner_box.first; ++iter)
   {
     outer_box_matches.push_back(std::get<RECOid>(*iter));
   }
   for (auto iter = inner_box.second; iter != outer_box.second; ++iter)
   {
     outer_box_matches.push_back(std::get<RECOid>(*iter));
   }
 
   // resort recoData back to phi order
   std::sort(mix_pair.first, mix_pair.second, CompRECOtoPhi());
 
   // return the box matches
   return std::make_pair(inner_box_matches, outer_box_matches);
 }
 
 void TruthRecoTrackMatching::match_tracks_in_box(
     std::vector<std::pair<unsigned short, unsigned short>>& box_pairs  // possible matches by proximity in eta, phi, pT
 )
 {
   if (box_pairs.size() == 0)
   {
     return;
   }
 
   std::sort(box_pairs.begin(), box_pairs.end());  // sorted by first index_true, then id_reco
   std::vector<PossibleMatch> poss_matches;
 
   auto ipair = box_pairs.begin();  // save current examined pair for sorting/unsorting purposes
   while (ipair != box_pairs.end())
   {
     auto id_true = ipair->first;
 
     // See if this track already has the maximum number of matches. If it does, then skip all pairs using this truth-track-index;
     if (at_nmax_index_true(id_true))
     {
       while (ipair != box_pairs.end())
       {
         ++ipair;
         if (ipair->first != id_true)
         {
           break;
         }
       }
       continue;
     }
 
     // make all possible reco matches matched for this track
     /* std::map<TrkrDefs::hitsetkey,TrkrDefs::cluskey> truth_keys; */
     m_TCEval.addClusKeys(m_TrkrTruthTrackContainer->getTruthTrack(id_true));
     // add the truth keys into the track counter
     /* auto truth_track = m_TrkrTruthTrackContainer->getTruthTrack(id_true); */
     /* for (auto& key : truth_track->getClusters()) { */
     /*   truth_keys[TrkrDefs::getHitSetKeyFromClusKey(key)] = key; */
     /* } */
     /* unsigned short nclus_true = truth_keys.size(); */
 
     while (ipair != box_pairs.end())
     {  // Loop over all possible matches only for this index_true
       //(subsequent true tracks will be caught on following loops)
       if (ipair->first != id_true)
       {
         break;  // never true on first iteration
       }
       if (at_nmax_id_reco(ipair->second))
       {
         ++ipair;
         continue;
       }  // make sure the reco-track isn't alread matched
       // ok, make a possible match: compare the clusters in the truth track and the reco track
       SvtxTrack* reco_track = m_SvtxTrackMap->get(ipair->second);
       m_TCEval.addClusKeys(reco_track);
       m_TCEval.find_matches();
 
       /* unsigned short nclus_match   = 0; // fill in the comparison loop */
       /* unsigned short nclus_nomatch = 0; // number of reco and truth cluster
        *             // that share a hitsetkey, but still fair matching criteria */
       /* unsigned short nclus_reco    = 0; // count in the comparison loop */
       // do the comparison of the tracks
       /* for (auto reco_ckey : G4Eval::ClusKeyIter(reco_track)) { */
       /*   ++nclus_reco; */
       /*   auto hitsetkey = TrkrDefs::getHitSetKeyFromClusKey(reco_ckey); */
       /*   if (truth_keys.count(hitsetkey) != 0) { */
       /*     // reco and truth cluster are in same hitsetkey-indexed subsurface. */
       /*     // See if they match (++nclus_match) or not (++nclus_nomatch) */
       /*     if (m_cluster_comp(truth_keys[hitsetkey], reco_ckey).first) { */
       /*       ++nclus_match; */
       /*     } else { */
       /*       ++nclus_nomatch; */
       /*     } */
       /*   } */
       /* } */
       unsigned short nclus_match = m_TCEval.phg4_n_matched();
       unsigned short nclus_true = m_TCEval.phg4_nclus();
       unsigned short nclus_reco = m_TCEval.svtx_nclus();
       unsigned short nclus_nomatch = (int) (m_TCEval.svtx_keys.size() - nclus_match);
 
       if (Verbosity() > 100)
       {
         auto truth_track = m_TrkrTruthTrackContainer->getTruthTrack(id_true);
         std::cout << (boost::format(
                          "possmatch:(phi,eta,pT:id) true(%5.2f,%5.2f,%4.2f:%2i) reco(%5.2f,%5.2f,%4.2f:%2i) "
                          "nCl(match:true:reco:nomatch)(%2i-%2i-%2i-%2i)")
                          %truth_track->getPhi() %truth_track->getPseudoRapidity() %truth_track->getPt()
               %((int) truth_track->getTrackid())
                          %reco_track->get_phi() %reco_track->get_eta() %reco_track->get_pt()
                          %ipair->second
               %((int) nclus_match) %((int) nclus_true) %((int) nclus_reco) %((int) nclus_nomatch)).str()
                   << std::endl;
       }
       if (nclus_match >= m_nmincluster_match && (static_cast<float>(nclus_match) / nclus_true >= m_nmincluster_ratio))
       {
         poss_matches.push_back(
             {nclus_match, nclus_true, nclus_reco,
              ipair->first, ipair->second});
       }
       ++ipair;
     }
   }
 
   // add all possible matches started for the largest PM_nmatch (the top)
   //  for groups of ties of PM_nmatch, sort by PM_ntrue (from smallest)
   //    for groups of ties (PM_nmatch, PM_ntrue), go by smallest PM_nreco
   //       for groups of ties (PM_nmatch, PM_ntrue, PM_nreco), do a detailed sum diff in the deltas
   std::sort(poss_matches.begin(), poss_matches.end(), SortPossibleMatch());
 
   if (Verbosity() > 200)
   {
     std::cout << " All chosen possible matches (" << poss_matches.size() << ") track pairs  (nClMatched-nClTrue-nClReco : idTrue-idReco)" << std::endl;
     int i{0};
     for (auto match : poss_matches)
     {
       /* auto truth_track = m_TrkrTruthTrackContainer->getTruthTracks()[std::get<PM_idtrue>(match)]; */
       /* auto index_trut = truth_track->getTrackid(); */
       std::cout << (boost::format(" pair(%2i):  %2i-%2i-%2i-<%2i>-%2i ") %(i++) %((int) std::get<PM_nmatch>(match)) %((int) std::get<PM_ntrue>(match)) %((int) std::get<PM_nreco>(match)) %((int) std::get<PM_idtrue>(match)) %((int) std::get<PM_idreco>(match))).str() << std::endl;
     }
   }
 
   /* std::set<int> matched_idreco, matched_idtrue; */
   auto iter = poss_matches.begin();
   while (iter != poss_matches.end())
   {
     if (skip_match(*iter))
     {
       ++iter;
       continue;
     }
     std::vector<std::pair<float, int>> sigma_metric = {{0., 0}};
     int n_sigma = 0;
     auto iter_same = iter + 1;  // iterator to look forward from first point and get detailed comparisons for all possibly matched tracks
     while (
         iter_same != poss_matches.end() && (*iter_same)[PM_nmatch] == (*iter)[PM_nmatch] && (*iter_same)[PM_ntrue] == (*iter)[PM_ntrue] && (*iter_same)[PM_nreco] == (*iter)[PM_nreco])
     {
       ++n_sigma;
       if (n_sigma == 1)
       {
         sigma_metric[0].first = sigma_CompMatchClusters(*iter);
       }
       sigma_metric.emplace_back(sigma_CompMatchClusters(*iter_same), n_sigma);
       ++iter_same;
     }
     std::sort(sigma_metric.begin(), sigma_metric.end());
 
     bool first = true;
     for (auto& sigma : sigma_metric)
     {
       if (first)
       {
         first = false;
       }
       else if (skip_match(*(iter + sigma.second)))
       {
         continue;
       }
       auto match = *(iter + sigma.second);
       auto id_true = match[PM_idtrue];
       auto id_reco = match[PM_idreco];
       auto save_match = new EmbRecoMatchv1(id_true, id_reco,
                                            match[PM_ntrue], match[PM_nreco], match[PM_nmatch]);
       m_EmbRecoMatchContainer->addMatch(save_match);
 
       if (m_nmatched_index_true.find(id_true) == m_nmatched_index_true.end())
       {
         m_nmatched_index_true[id_true] = 1;
       }
       else
       {
         m_nmatched_index_true[id_true] += 1;
       }
     }
     iter += sigma_metric.size();
   }
 }
 
 // ----------------------------------------
 // convenience function
 // ----------------------------------------
 inline float TruthRecoTrackMatching::abs_dphi(float phi0, float phi1)
 {
   float dphi = std::fabs(phi0 - phi1);
   while (dphi > M_PI)
   {
     dphi = std::fabs(dphi - 2 * M_PI);
   }
   return dphi;
 }
 
 float TruthRecoTrackMatching::sigma_CompMatchClusters(PossibleMatch& match)
 {
   auto id_true = match[PM_idtrue];
   auto id_reco = match[PM_idreco];
 
   m_TCEval.addClusKeys(m_TrkrTruthTrackContainer->getTruthTrack(id_true));
   m_TCEval.addClusKeys(m_SvtxTrackMap->get(id_reco));
 
   m_TCEval.find_matches();
 
   int n_matched = m_TCEval.phg4_n_matched();
 
   if (n_matched)
   {
     return std::numeric_limits<float>::max();
   }
   else
   {
     return m_TCEval.match_stat / n_matched;
   }
 }
 /* auto truth_track = m_TrkrTruthTrackContainer->getTruthTrack(id_true); */
 /* if (!truth_track) return std::numeric_limits<float>::max(); */
 /* std::map<TrkrDefs::hitsetkey,TrkrDefs::cluskey> truth_keys; // truth cluster keys */
 /* for (auto& key : truth_track->getClusters()) */
 /*   truth_keys[TrkrDefs::getHitSetKeyFromClusKey(key)] = key; */
 
 /* SvtxTrack* reco_track = m_SvtxTrackMap->get(id_reco); */
 /* if (!reco_track) return std::numeric_limits<float>::max(); */
 
 /* auto tpcseed = reco_track->get_tpc_seed(); */
 /* if (!tpcseed)    return std::numeric_limits<float>::max(); */
 
 /* double n_matches = 0.; // get the mean match values */
 /* double sum_diff  = 0.; */
 
 /* for (auto reco_ckey : G4Eval::ClusKeyIter(reco_track)) { */
 /* auto hitsetkey = TrkrDefs::getHitSetKeyFromClusKey(reco_ckey); */
 /* if (truth_keys.count(hitsetkey) == 0) continue; */
 /* auto comp_val = m_cluster_comp(truth_keys[hitsetkey], reco_ckey); */
 
 /* if (comp_val.first) { */
 /* n_matches += 1.; */
 /* sum_diff += comp_val.second; */
 /* } */
 /* } */
 /* return sum_diff/n_matches; */
 /* } */
 
 inline bool TruthRecoTrackMatching::skip_match(PossibleMatch& match)
 {
   return at_nmax_id_reco(match[PM_idreco]) || at_nmax_index_true(match[PM_idreco]);
 }
 
 // ----------------------------------------------
 // functions for permissible matching pt
 // Currently not used, therefore tracks of any pT
 // will be compared against each other.
 // If wanted, will have to be updated with
 // same values in the future.
 // ----------------------------------------------
 float TruthRecoTrackMatching::delta_outer_pt(float pt) const
 {
   return -1. + pt * 0.;  // 10. + 0.01*pt;
 }
 float TruthRecoTrackMatching::delta_inner_pt(float pt) const
 {
   return -1. + pt * 0.;  // 10. + 0.01*pt;
 }
 
 bool TruthRecoTrackMatching::at_nmax_index_true(unsigned short index_true)
 {
   if (m_nmatched_index_true.find(index_true) == m_nmatched_index_true.end())
   {
     return false;
   }
   return m_nmatched_index_true[index_true] >= m_max_nreco_per_truth;
 }
 
 bool TruthRecoTrackMatching::at_nmax_id_reco(unsigned short id_reco)
 {
   if (m_nmatched_id_reco->find(id_reco) == m_nmatched_id_reco->end())
   {
     return false;
   }
   return (*m_nmatched_id_reco)[id_reco] >= m_max_ntruth_per_reco;
 }
 
 void TruthRecoTrackMatching::set_diagnostic_file(const std::string& file_name)
 {
   m_write_diag = true;
   TFile* s_current = gDirectory->GetFile();
   m_diag_file = new TFile(file_name.c_str(), "recreate");
   // write out the cuts on this set of data
   m_diag_file->cd();
   m_diag_tree = new TTree("T", "Tree of Reco and True Clusters");
 
   m_diag_tree->Branch("event", &m_event);
 
   m_diag_tree->Branch("trkid_reco_matched", &m_trkid_reco_matched);
   m_diag_tree->Branch("itrk_reco_matched", &m_cnt_reco_matched);
   m_diag_tree->Branch("i0_reco_matched", &m_i0_reco_matched);
   m_diag_tree->Branch("i1_reco_matched", &m_i1_reco_matched);
   m_diag_tree->Branch("layer_reco_matched", &m_layer_reco_matched);
   m_diag_tree->Branch("x_reco_matched", &m_x_reco_matched);
   m_diag_tree->Branch("y_reco_matched", &m_y_reco_matched);
   m_diag_tree->Branch("z_reco_matched", &m_z_reco_matched);
 
   m_diag_tree->Branch("trkid_reco_notmatched", &m_trkid_reco_notmatched);
   m_diag_tree->Branch("itrk_reco_notmatched", &m_cnt_reco_notmatched);
   m_diag_tree->Branch("i0_reco_notmatched", &m_i0_reco_notmatched);
   m_diag_tree->Branch("i1_reco_notmatched", &m_i1_reco_notmatched);
   m_diag_tree->Branch("layer_reco_notmatched", &m_layer_reco_notmatched);
   m_diag_tree->Branch("x_reco_notmatched", &m_x_reco_notmatched);
   m_diag_tree->Branch("y_reco_notmatched", &m_y_reco_notmatched);
   m_diag_tree->Branch("z_reco_notmatched", &m_z_reco_notmatched);
 
   m_diag_tree->Branch("trkid_true_matched", &m_trkid_true_matched);
   m_diag_tree->Branch("itrk_true_matched", &m_cnt_true_matched);
   m_diag_tree->Branch("i0_true_matched", &m_i0_true_matched);
   m_diag_tree->Branch("i1_true_matched", &m_i1_true_matched);
   m_diag_tree->Branch("layer_true_matched", &m_layer_true_matched);
   m_diag_tree->Branch("x_true_matched", &m_x_true_matched);
   m_diag_tree->Branch("y_true_matched", &m_y_true_matched);
   m_diag_tree->Branch("z_true_matched", &m_z_true_matched);
 
   m_diag_tree->Branch("trkid_true_notmatched", &m_trkid_true_notmatched);
   m_diag_tree->Branch("itrk_true_notmatched", &m_cnt_true_notmatched);
   m_diag_tree->Branch("i0_true_notmatched", &m_i0_true_notmatched);
   m_diag_tree->Branch("i1_true_notmatched", &m_i1_true_notmatched);
   m_diag_tree->Branch("layer_true_notmatched", &m_layer_true_notmatched);
   m_diag_tree->Branch("x_true_notmatched", &m_x_true_notmatched);
   m_diag_tree->Branch("y_true_notmatched", &m_y_true_notmatched);
   m_diag_tree->Branch("z_true_notmatched", &m_z_true_notmatched);
 
   if (s_current != nullptr)
   {
     s_current->cd();
   }
 }
 
 void TruthRecoTrackMatching::clear_branch_vectors()
 {
   m_trkid_reco_matched.clear();
   m_i0_reco_matched.clear();
   m_i1_reco_matched.clear();
   m_layer_reco_matched.clear();
   m_x_reco_matched.clear();
   m_y_reco_matched.clear();
   m_z_reco_matched.clear();
 
   m_trkid_reco_notmatched.clear();
   m_i0_reco_notmatched.clear();
   m_i1_reco_notmatched.clear();
   m_layer_reco_notmatched.clear();
   m_x_reco_notmatched.clear();
   m_y_reco_notmatched.clear();
   m_z_reco_notmatched.clear();
 
   m_trkid_true_matched.clear();
   m_i0_true_matched.clear();
   m_i1_true_matched.clear();
   m_layer_true_matched.clear();
   m_x_true_matched.clear();
   m_y_true_matched.clear();
   m_z_true_matched.clear();
 
   m_trkid_true_notmatched.clear();
   m_i0_true_notmatched.clear();
   m_i1_true_notmatched.clear();
   m_layer_true_notmatched.clear();
   m_x_true_notmatched.clear();
   m_y_true_notmatched.clear();
   m_z_true_notmatched.clear();
 }
 
 void TruthRecoTrackMatching::fill_tree()
 {
   // fill clusters or un-matched truth tracks
   int cnt = 0;
   int itrk = 0;
   for (auto& trkid : m_EmbRecoMatchContainer->ids_TruthUnmatched())
   {
     m_trkid_true_notmatched.push_back(trkid);
     m_i0_true_notmatched.push_back(cnt);
     auto track = m_TrkrTruthTrackContainer->getTruthTrack(trkid);
     for (auto& ckey : track->getClusters())
     {
       auto cluster = m_TruthClusterContainer->findCluster(ckey);
       m_cnt_true_notmatched.push_back(itrk);
       Eigen::Vector3d gloc = m_ActsGeometry->getGlobalPosition(ckey, cluster);
       m_layer_true_notmatched.push_back(TrkrDefs::getLayer(ckey));
       m_x_true_notmatched.push_back(gloc[0]);
       m_y_true_notmatched.push_back(gloc[1]);
       m_z_true_notmatched.push_back(gloc[2]);
       ++cnt;
     }
     m_i1_true_notmatched.push_back(cnt);
     ++itrk;
   }
 
   // fill clusters of matched truth tracks
   cnt = 0;
   itrk = 0;
   for (auto& trkid : m_EmbRecoMatchContainer->ids_TruthMatched())
   {
     m_trkid_true_matched.push_back(trkid);
     m_i0_true_matched.push_back(cnt);
     auto track = m_TrkrTruthTrackContainer->getTruthTrack(trkid);
     for (auto& ckey : track->getClusters())
     {
       auto cluster = m_TruthClusterContainer->findCluster(ckey);
       m_cnt_true_matched.push_back(itrk);
       Eigen::Vector3d gloc = m_ActsGeometry->getGlobalPosition(ckey, cluster);
       m_layer_true_matched.push_back(TrkrDefs::getLayer(ckey));
       m_x_true_matched.push_back(gloc[0]);
       m_y_true_matched.push_back(gloc[1]);
       m_z_true_matched.push_back(gloc[2]);
       ++cnt;
     }
     m_i1_true_matched.push_back(cnt);
     ++itrk;
   }
 
   // fill clusters of matched reco tracks
   std::set<unsigned int> set_reco_matched;
   cnt = 0;
   itrk = 0;
   for (auto& trkid : m_EmbRecoMatchContainer->ids_RecoMatched())
   {
     set_reco_matched.insert(trkid);
     m_trkid_reco_matched.push_back(trkid);
     SvtxTrack* reco_track = m_SvtxTrackMap->get(trkid);
     m_i0_reco_matched.push_back(cnt);
 
     for (auto reco_ckey : ClusKeyIter(reco_track))
     {
       auto cluster = m_RecoClusterContainer->findCluster(reco_ckey);
       Eigen::Vector3d gloc = m_ActsGeometry->getGlobalPosition(reco_ckey, cluster);
       m_layer_reco_matched.push_back(TrkrDefs::getLayer(reco_ckey));
       m_cnt_reco_matched.push_back(itrk);
       m_x_reco_matched.push_back(gloc[0]);
       m_y_reco_matched.push_back(gloc[1]);
       m_z_reco_matched.push_back(gloc[2]);
       ++cnt;
     }
     m_i1_reco_matched.push_back(cnt);
     ++itrk;
   }
 
   // fill clusters of not matched reco tracks
   cnt = 0;
   itrk = 0;
   for (auto& reco : *m_SvtxTrackMap)
   {
     auto trkid = reco.first;
     if (set_reco_matched.count(trkid))
     {
       continue;
     }
     m_trkid_reco_notmatched.push_back(trkid);
     SvtxTrack* reco_track = m_SvtxTrackMap->get(trkid);
     m_i0_reco_notmatched.push_back(cnt);
     for (auto reco_ckey : ClusKeyIter(reco_track))
     {
       auto cluster = m_RecoClusterContainer->findCluster(reco_ckey);
       Eigen::Vector3d gloc = m_ActsGeometry->getGlobalPosition(reco_ckey, cluster);
       m_layer_reco_notmatched.push_back(TrkrDefs::getLayer(reco_ckey));
       m_cnt_reco_notmatched.push_back(itrk);
       m_x_reco_notmatched.push_back(gloc[0]);
       m_y_reco_notmatched.push_back(gloc[1]);
       m_z_reco_notmatched.push_back(gloc[2]);
       ++cnt;
     }
     m_i1_reco_notmatched.push_back(cnt);
     ++itrk;
   }
   ++m_event;
   m_diag_tree->Fill();
   clear_branch_vectors();
   return;
 }

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