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 // use #include "" only for your local include and put
 // those in the first line(s) before any #include <>
 // otherwise you are asking for weird behavior
 // (more info - check the difference in include path search when using "" versus <>)
 
 #include "SepdMon.h"
 
 #include <onlmon/OnlMon.h>  // for OnlMon
 #include <onlmon/OnlMonDB.h>
 #include <onlmon/OnlMonServer.h>
 #include <onlmon/pseudoRunningMean.h>
 #include <onlmon/triggerEnum.h> // for trigger selection
 
 #include <calobase/TowerInfoDefs.h>
 #include <caloreco/CaloWaveformFitting.h>
 
 #include <Event/Event.h>
 #include <Event/eventReceiverClient.h>
 #include <Event/msg_profile.h>
 
 #include <TH1.h>
 #include <TH2.h>
 #include <TProfile.h>
 #include <TRandom.h>
 
 #include <cmath>
 #include <cstdio>  // for printf
 #include <fstream>
 #include <iostream>
 #include <sstream>
 #include <string>  // for allocator, string, char_traits
 
 enum
 {
   TRGMESSAGE = 1,
   FILLMESSAGE = 2
 };
 
 SepdMon::SepdMon(const std::string &name)
   : OnlMon(name)
 {
   // leave ctor fairly empty, its hard to debug if code crashes already
   // during a new EpdMon()
   return;
 }
 
 SepdMon::~SepdMon()
 {
   // you can delete NULL pointers it results in a NOOP (No Operation)
   std::vector<runningMean *>::iterator rm_it;
   for (auto iter : rm_packet_number)
   {
     delete iter;
   }
   for (auto iter : rm_packet_length)
   {
     delete iter;
   }
   for (auto iter : rm_packet_chans)
   {
     delete iter;
   }
   for (auto iter : rm_packet_event)
   {
     delete iter;
   }
   if (erc)
   {
     delete erc;
   }
   return;
 }
 
 int SepdMon::Init()
 {
   gRandom->SetSeed(rand());
   // read our calibrations from EpdMonData.dat
   /*
   const char *sepdcalib = getenv("SEPDCALIB");
   if (!sepdcalib)
   {
     std::cout << "SEPDCALIB environment variable not set" << std::endl;
     exit(1);
   }
   std::string fullfile = std::string(sepdcalib) + "/" + "SepdMonData.dat";
   std::ifstream calib(fullfile);
 
   calib.close();
    */
   // use printf for stuff which should go the screen but not into the message
   // system (all couts are redirected)
   printf("doing the Init\n");
 
   // --- copied straight from the MBD code
   mbdns = (0x1UL << TriggerEnum::MBD_NS2) | (0x1UL << TriggerEnum::MBD_NS1); // mbd wide triggers
   mbdnsvtx10 = (0x1UL << TriggerEnum::MBD_NS2_ZVRTX10) | (0x1UL << TriggerEnum::MBD_NS1_ZVRTX10);
   mbdnsvtx30 = (0x1UL << TriggerEnum::MBD_NS2_ZVRTX30);
   mbdnsvtx150 = (0x1UL << TriggerEnum::MBD_NS2_ZVRTX150);
   mbdtrig = mbdns | mbdnsvtx10 | mbdnsvtx30 | mbdnsvtx150;
 
 
   h_ADC_all_channel = new TH1D("h_ADC_all_channel",";;",768,-0.5,767.5);
   h_hits_all_channel = new TH1D("h_hits_all_channel",";;",768,-0.5,767.5);
 
   p_noiserms_all_channel = new TProfile("p_noiserms_all_channel","",768,0,768,"S");
 
   int nADCcorr = 500;
   double ADCcorrmax = 6e6;
   int nhitscorr = 500;
   double hitscorrmax = 1000;
   h_ADC_corr = new TH2F("h_ADC_corr", ";ADC sum (south); ADC sum (north)", nADCcorr, 0, ADCcorrmax, nADCcorr, 0, ADCcorrmax);
   h_hits_corr = new TH2F("h_hits_corr", ";N hits sum (south); N hits sum (north)", nhitscorr, 0, hitscorrmax, nhitscorr, 0, hitscorrmax);
 
   h_event = new TH1D("h_event", "", 1, 0, 1);
 
   // waveform processing
   h1_waveform_twrAvg = new TH1D("h1_waveform_twrAvg", "", n_samples_show, 0.5, n_samples_show + 0.5);
   h1_waveform_time = new TH1D("h1_waveform_time", "", n_samples_show, 0.5, n_samples_show + 0.5);
   //h1_waveform_pedestal = new TH1D("h1_waveform_pedestal", "", 42, 1.0e3, 2.0e3);
   // --- wider range and more bins, copied from HCal
   h1_waveform_pedestal = new TH1F("h1_waveform_pedestal", "", 5e3, 0, 5e3);
   h2_sepd_waveform = new TH2F("h2_sepd_waveform", "", n_samples_show, 0.5, n_samples_show + 0.5, 1000, 0, 15000);
 
   // waveform processing, template vs. fast interpolation
   h1_sepd_fitting_sigDiff = new TH1D("h1_fitting_sigDiff", "", 50, 0, 2);
   h1_sepd_fitting_pedDiff = new TH1D("h1_fitting_pedDiff", "", 50, 0, 2);
   h1_sepd_fitting_timeDiff = new TH1D("h1_fitting_timeDiff", "", 50, -10, 10);
 
   // packet stuff
   h1_packet_number = new TH1D("h1_packet_number", "", 6, packetlow - 0.5, packethigh + 0.5);
   h1_packet_length = new TH1D("h1_packet_length", "", 6, packetlow - 0.5, packethigh + 0.5);
   h1_packet_chans = new TH1D("h1_packet_chans", "", 6, packetlow - 0.5, packethigh + 0.5);
   h1_packet_event = new TH1D("h1_packet_event", "", 6, packetlow - 0.5, packethigh + 0.5);
 
   for (int i = 0; i < 6; i++)
   {
     rm_packet_number.push_back(new pseudoRunningMean(1, packet_depth));
     rm_packet_length.push_back(new pseudoRunningMean(1, packet_depth));
     rm_packet_chans.push_back(new pseudoRunningMean(1, packet_depth));
     rm_packet_event.push_back(new pseudoRunningMean(1, packet_depth));
   }
 
   OnlMonServer *se = OnlMonServer::instance();
   // register histograms with server otherwise client won't get them
   // first histogram uses the TH1->GetName() as key
   se->registerHisto(this, h_ADC_all_channel);
   se->registerHisto(this, h_hits_all_channel);
   se->registerHisto(this, h_ADC_corr);
   se->registerHisto(this, h_hits_corr);
   se->registerHisto(this, h_event);
   se->registerHisto(this, h1_waveform_twrAvg);
   se->registerHisto(this, h1_waveform_time);
   se->registerHisto(this, h1_waveform_pedestal);
   se->registerHisto(this, h2_sepd_waveform);
   se->registerHisto(this, h1_packet_number);
   se->registerHisto(this, h1_packet_length);
   se->registerHisto(this, h1_packet_chans);
   se->registerHisto(this, h1_packet_event);
   //  se->registerHisto(this, h1_sepd_fitting_sigDiff);
   //  se->registerHisto(this, h1_sepd_fitting_pedDiff);
   //  se->registerHisto(this, h1_sepd_fitting_timeDiff);
 
   // save inidividual channel ADC distribution
   //for (int ichannel = 0; ichannel < nChannels; ichannel++)
   for (int ichannel = 0; ichannel < 768; ichannel++)
   {
     h_ADC_channel[ichannel] = new TH1D(Form("h_ADC_channel_%d", ichannel), ";ADC;Counts", 1000, 0, 1000);
     se->registerHisto(this, h_ADC_channel[ichannel]);
   }
   se->registerHisto(this, p_noiserms_all_channel);
 
   // initialize waveform extraction tool
   WaveformProcessingFast = new CaloWaveformFitting();
 
   WaveformProcessingTemp = new CaloWaveformFitting();
 
   std::string sepdtemplate;
   if (getenv("SEPDCALIB"))
   {
     sepdtemplate = getenv("SEPDCALIB");
   }
   else
   {
     sepdtemplate = ".";
   }
   sepdtemplate += std::string("/testbeam_sepd_template.root");
   // WaveformProcessingTemp->initialize_processing(sepdtemplate);
 
   Reset();
 
   // if (anaGL1)
   // {
   //erc = new eventReceiverClient("localhost"); // local testing
   erc = new eventReceiverClient("gl1daq"); // 1008 deployment
   // }
 
   return 0;
 }
 
 int SepdMon::BeginRun(const int /* runno */)
 {
   // if you need to read calibrations on a run by run basis
   // this is the place to do it
   std::vector<runningMean *>::iterator rm_it;
   for (rm_it = rm_packet_number.begin(); rm_it != rm_packet_number.end(); ++rm_it)
   {
     (*rm_it)->Reset();
   }
   for (rm_it = rm_packet_length.begin(); rm_it != rm_packet_length.end(); ++rm_it)
   {
     (*rm_it)->Reset();
   }
   for (rm_it = rm_packet_chans.begin(); rm_it != rm_packet_chans.end(); ++rm_it)
   {
     (*rm_it)->Reset();
   }
   for (rm_it = rm_packet_event.begin(); rm_it != rm_packet_event.end(); ++rm_it)
   {
     (*rm_it)->Reset();
   }
   // if (anaGL1)
   // {
   OnlMonServer *se = OnlMonServer::instance();
   se->UseGl1();
   // }
   return 0;
 }
 
 // simple wavefrom analysis for possibe issues with the wavforProcessor
 std::vector<float> SepdMon::getSignal(Packet *p, const int channel)
 {
   double baseline = 0;
   for (int s = 0; s < 3; s++)
   {
     baseline += p->iValue(s, channel);
   }
   baseline /= 3.;
 
   double signal = 0;
   float x = 0;
   for (int s = 3; s < p->iValue(0, "SAMPLES"); s++)
   {
     x++;
     signal += p->iValue(s, channel) - baseline;
   }
 
   signal /= x;
 
   // simulate a failure  if ( evtcount > 450 && p->getIdentifier() ==6011) return 0;
 
   std::vector<float> result;
   result.push_back(signal);
   result.push_back(2);
   result.push_back(1);
   return result;
 }
 
 std::vector<float> SepdMon::anaWaveformFast(Packet *p, const int channel)
 {
   std::vector<float> waveform;
   for (int s = 0; s < p->iValue(0, "SAMPLES"); s++)
   {
     waveform.push_back(p->iValue(s, channel));
   }
   std::vector<std::vector<float>> multiple_wfs;
   multiple_wfs.push_back(waveform);
 
   std::vector<std::vector<float>> fitresults_sepd;
   fitresults_sepd = WaveformProcessingFast->calo_processing_fast(multiple_wfs);
 
   std::vector<float> result;
   result = fitresults_sepd.at(0);
 
   return result;
 }
 
 std::vector<float> SepdMon::anaWaveformTemp(Packet *p, const int channel)
 {
   std::vector<float> waveform;
   for (int s = 0; s < p->iValue(0, "SAMPLES"); s++)
   {
     waveform.push_back(p->iValue(s, channel));
   }
   std::vector<std::vector<float>> multiple_wfs;
   multiple_wfs.push_back(waveform);
 
   std::vector<std::vector<float>> fitresults_sepd;
   fitresults_sepd = WaveformProcessingTemp->process_waveform(multiple_wfs);
 
   std::vector<float> result;
   result = fitresults_sepd.at(0);
 
   return result;
 }
 
 int SepdMon::process_event(Event *e /* evt */)
 {
   evtcnt++;
   //h1_packet_event->Reset(); // not sure about this...
   unsigned int ChannelNumber = 0;
   //  float sectorAvg[Nsector] = {0};
   // int phi_in = 0;
   // float phi;
   // float r;
   int sumhit_s = 0;
   int sumhit_n = 0;
   long double sumADC_s = 0;
   long double sumADC_n = 0;
 
   // --- get the trigger info...
   bool is_trigger_okay = false;
   int evtnr = e->getEvtSequence();
   Event* gl1Event = erc->getEvent(evtnr);
   // --- only do this insanity for diagnostic purposes and a small number of events
   // std::cout << "event number evtnr is " << evtnr << std::endl;
   // std::cout << "gl1Event pointer is " << gl1Event << std::endl;
   if ( gl1Event )
     {
       OnlMonServer *se = OnlMonServer::instance();
       se->IncrementGl1FoundCounter();
       Packet* pgl1 = gl1Event->getPacket(14001);
       // --- only do this insanity for diagnostic purposes and a small number of events
       // std::cout << "gl1 packet 14001 pointer is " << pgl1 << std::endl;
       if ( pgl1 )
         {
           uint64_t triggervec = pgl1->lValue(0, "ScaledVector");
           is_trigger_okay = triggervec & mbdtrig;
           // --- only do this insanity for diagnostic purposes and a small number of events
           // std::cout << "triggervec is " << triggervec << std::endl;
           // std::cout << "mbdtrig is " << mbdtrig << std::endl;
           // std::cout << "trigger decision is " << is_trigger_okay << std::endl;
           delete pgl1;
         }
       delete gl1Event;
     }
 
   uint64_t zdc_clock = 0;
   Packet* pzdc = e->getPacket(12001);
   if ( pzdc )
     {
       zdc_clock = pzdc->lValue(0,"CLOCK");
       // --- only do this insanity for diagnostic purposes and a small number of events
       // std::cout << "ZDC clock is " << zdc_clock << std::endl;
       delete pzdc;
     }
   // --- only do this insanity for diagnostic purposes and a small number of events
   // else std::cout << "Why no ZDC packet..." << std::endl;
 
   // loop over packets which contain a single sector
   for (int packet = packetlow; packet <= packethigh; packet++)
   {
     Packet *p = e->getPacket(packet);
     int packet_index = packet - packetlow;
     int packet_bin = packet - packetlow + 1;
     if (p)
     {
       int one[1] = {1};
       rm_packet_number[packet_index]->Add(one);
       int packet_length[1] = {p->getLength()};
       rm_packet_length[packet_index]->Add(packet_length);
 
       h1_packet_length->SetBinContent(packet_bin, rm_packet_length[packet_index]->getMean(0));
 
       // ---
       uint64_t p_clock = p->lValue(0,"CLOCK");
       long long clock_diff = p_clock-zdc_clock;
       double cd = (double)clock_diff;
       // --- only do this insanity for diagnostic purposes and a small number of events
       // std::cout << "Packet clock is " << p_clock << " and clock diff is " << clock_diff << " " << cd << std::endl;
       // --- trying to improve clock diff...
       // --- currently we overwrite the histogram with the difference from the latest event
       // --- not sure if we want to do that or running mean, which is done for the number, length, channels
       // h1_packet_event->SetBinContent(packet - packetlow + 1, p->lValue(0, "CLOCK"));
       // h1_packet_event->SetBinContent(packet_bin, clock_diff);
       // h1_packet_event->SetBinContent(packet_bin, cd);
       rm_packet_event[packet_index]->Add(&cd);
       h1_packet_event->SetBinContent(packet_bin, rm_packet_event[packet_index]->getMean(0));
       // --- only do this insanity for diagnostic purposes and a small number of events
       // std::cout << "Histogram bin " << packet_bin << " center " << h1_packet_event->GetBinCenter(packet_bin) << " bin content " << h1_packet_event->GetBinContent(packet_bin) << std::endl;
       int nPacketChannels = p->iValue(0, "CHANNELS");
       if (nPacketChannels > m_nChannels)
       {
         return -1;  // packet is corrupted, reports too many channels
       }
       // else
       // {
       //   rm_packet_chans[packet - packetlow]->Add(&nChannels);
       //   h1_packet_chans->SetBinContent(packet_bin, rm_packet_chans[packet - packetlow]->getMean(0));
       // }
       int channel_counter = 0;
       for (int c = 0; c < p->iValue(0, "CHANNELS"); c++)
       {
         // msg << "Filling channel: " << c << " for packet: " << packet << std::endl;
         // se->send_message(this, MSG_SOURCE_UNSPECIFIED, MSG_SEV_INFORMATIONAL, msg.str(), TRGMESSAGE);
         //  record waveform to show the average waveform
         channel_counter++;
 
         ChannelNumber++;
         int ch = ChannelNumber-1;
 
         // -- bit flipped ADC channels
         //bool reject_this_channel = false;
         //if ( ( packet == 9001 || packet == 9002 || packet == 9006 ) && c == 30 )
         //  reject_this_channel = true;
 
         //if ( reject_this_channel ) continue;
 
         // std::vector result =  getSignal(p,c); // simple peak extraction
         std::vector<float> resultFast = anaWaveformFast(p, c);  // fast waveform fitting
         float signalFast = resultFast.at(0);
         float timeFast = resultFast.at(1);
         float pedestalFast = resultFast.at(2);
         float prepost = p->iValue(c, "PRE") - p->iValue(c, "POST");
         if ( prepost > 0 )
           {
             p_noiserms_all_channel->Fill(ch,prepost);
             p_noiserms_all_channel->Fill(ch,-prepost);
           }
 
         // --- Run24pp
         //bool is_good_hit = ( signalFast > 50 && signalFast < 3000 );
         // --- Run25AuAu
         bool is_good_hit = ( signalFast > 50 && signalFast < 15000 );
 
         // std::vector<float> resultTemp = anaWaveformTemp(p, c);  // template waveform fitting
         // float signalTemp = resultTemp.at(0);
         // float timeTemp  = resultTemp.at(1);
         // float pedestalTemp = resultTemp.at(2);
         if (signalFast > hit_threshold)
         {
           for (int s = 0; s < p->iValue(0, "SAMPLES"); s++)
           {
             h2_sepd_waveform->Fill(s, p->iValue(s, c) - pedestalFast);
           }
         }
         // ---
         if ( signalFast > 0 && signalFast < 1e10 )
           {
             // --- 1d ADC distributions for all channels
             h_ADC_channel[ch]->Fill(signalFast);
             // --- total ADC vs channel number
             h_ADC_all_channel->Fill(ch,signalFast);
             // --- total hits vs channel number
             if ( is_good_hit ) h_hits_all_channel->Fill(ch);
             // --- 1d waveform
             h1_waveform_time->Fill(timeFast);
             h1_waveform_pedestal->Fill(pedestalFast);
           }
         // ---
 
         // h1_sepd_fitting_sigDiff -> Fill(signalFast/signalTemp);
         // h1_sepd_fitting_pedDiff -> Fill(pedestalFast/pedestalTemp);
         // h1_sepd_fitting_timeDiff -> Fill(timeFast - timeTemp);
 
         int z_bin = -1;
         if ( ch >= 384 && ch <= 767 ) z_bin = 0;
         if ( ch <= 383 && ch >= 0 ) z_bin = 1;
 
         if ( z_bin == 0 && is_good_hit )
         {
           sumhit_s++;
           sumADC_s += signalFast;
         }
         if ( z_bin == 1 && is_good_hit )
         {
           sumhit_n++;
           sumADC_n += signalFast;
         }
 
       }  // channel loop end
     rm_packet_chans[packet_index]->Add(&channel_counter);
     h1_packet_chans->SetBinContent(packet_bin, rm_packet_chans[packet_index]->getMean(0));
     }    //  if packet good
     else
     {
       ChannelNumber += 128;
       int zero[1] = {0};
       rm_packet_number[packet_index]->Add(zero);
     }
     h1_packet_number->SetBinContent(packet_bin, rm_packet_number[packet_index]->getMean(0));
     delete p;
 
   }  // packet id loop end
 
   h_event->Fill(0);
   // h1_waveform_twrAvg->Scale(1. / 32. / 48.);  // average tower waveform
   h1_waveform_twrAvg->Scale((float) 1 / ChannelNumber);
 
   // --- need to make a trigger selection?
   if ( is_trigger_okay )
     {
       h_ADC_corr->Fill(sumADC_s, sumADC_n);
       h_hits_corr->Fill(sumhit_s, sumhit_n);
     }
 
   return 0;
 
 }
 
 int SepdMon::Reset()
 {
   // reset our internal counters
   evtcnt = 0;
   idummy = 0;
 
   return 0;
 }

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